Detailed information of SNP:
|
SNP ID:
sf0106308143(Gbrowse)
Chromosome: chr01 Position: 6308143 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 89.04% | 10.96% |
| All Indica | 798 | 93.86% | 6.14% |
| All Japonica | 494 | 92.71% | 7.29% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 79.72% | 20.28% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106308143 | G->T | INTERGENIC | None |