Detailed information of SNP:
|
SNP ID:
sf0106315449(Gbrowse)
Chromosome: chr01 Position: 6315449 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 94.10% | 5.90% |
| All Indica | 780 | 93.59% | 6.41% |
| All Japonica | 487 | 94.25% | 5.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 196 | 79.08% | 20.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 86 | 74.42% | 25.58% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106315449 | G->A | INTERGENIC | None |