Detailed information of SNP:
|
SNP ID:
sf0106327375(Gbrowse)
Chromosome: chr01 Position: 6327375 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 54.96% | 45.04% |
| All Indica | 796 | 24.62% | 75.38% |
| All Japonica | 471 | 99.15% | 0.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 9.09% | 90.91% |
| Indica II | 212 | 30.19% | 69.81% |
| Indica Intermediate | 210 | 46.67% | 53.33% |
| Temperate Japonica | 317 | 99.05% | 0.95% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106327375 | G->A | LOC_Os01g11720(LOC_Os01g11720.1) | Synonymous |