Detailed information of SNP:
|
SNP ID:
sf0106329325(Gbrowse)
Chromosome: chr01 Position: 6329325 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 88.33% | 11.67% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 496 | 89.72% | 10.28% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 75.36% | 24.64% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106329325 | G->A | LOC_Os01g11720(LOC_Os01g11720.1) | INTRON |