Detailed information of SNP:
|
SNP ID:
sf0106346718(Gbrowse)
Chromosome: chr01 Position: 6346718 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 63.79% | 36.21% |
| All Indica | 782 | 37.98% | 62.02% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 28.30% | 71.70% |
| Indica II | 210 | 40.95% | 59.05% |
| Indica Intermediate | 208 | 51.92% | 48.08% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106346718 | C->T | INTERGENIC | None |