Detailed information of SNP:
|
SNP ID:
sf0106351079(Gbrowse)
Chromosome: chr01 Position: 6351079 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.18% | 44.82% |
| All Indica | 799 | 23.78% | 76.22% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 7.73% | 92.27% |
| Indica II | 213 | 29.58% | 70.42% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106351079 | A->G | INTERGENIC | None |