Detailed information of SNP:
|
SNP ID:
sf0106365763(Gbrowse)
Chromosome: chr01 Position: 6365763 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.68% | 47.32% |
| All Indica | 799 | 68.96% | 31.04% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106365763 | T->A | LOC_Os01g11760(LOC_Os01g11760.1) | INTRON |