Detailed information of SNP:
|
SNP ID:
sf0106380026(Gbrowse)
Chromosome: chr01 Position: 6380026 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 96.60% | 3.40% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 490 | 92.24% | 7.76% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 64 | 65.62% | 34.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106380026 | C->T | LOC_Os01g11790(LOC_Os01g11790.1) | INTRON |