Detailed information of SNP:
|
SNP ID:
sf0106416380(Gbrowse)
Chromosome: chr01 Position: 6416380 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.62% | 39.38% |
| All Indica | 797 | 33.12% | 66.88% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 3.74% | 96.26% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106416380 | C->T | LOC_Os01g11860(LOC_Os01g11860.1) | INTRON |