Detailed information of SNP:
|
SNP ID:
sf0106426492(Gbrowse)
Chromosome: chr01 Position: 6426492 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 89.05% | 10.95% |
| All Indica | 796 | 87.81% | 12.19% |
| All Japonica | 496 | 89.31% | 10.69% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106426492 | G->A | LOC_Os01g11870(LOC_Os01g11870.1) | INTRON |