Detailed information of SNP:
|
SNP ID:
sf0106596852(Gbrowse)
Chromosome: chr01 Position: 6596852 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 59.96% | 40.04% |
| All Indica | 796 | 44.85% | 55.15% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 41.55% | 58.45% |
| Indica II | 212 | 59.91% | 40.09% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106596852 | C->G | INTERGENIC | None |