Detailed information of SNP:
|
SNP ID:
sf0106597597(Gbrowse)
Chromosome: chr01 Position: 6597597 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 77.59% | 22.41% |
| All Indica | 799 | 74.59% | 25.41% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106597597 | C->T | INTERGENIC | None |