Detailed information of SNP:
|
SNP ID:
sf0106603863(Gbrowse)
Chromosome: chr01 Position: 6603863 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 68.45% | 31.55% |
| All Indica | 797 | 59.47% | 40.53% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 50.53% | 49.47% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106603863 | T->C | INTERGENIC | None |