Detailed information of SNP:
|
SNP ID:
sf0106606583(Gbrowse)
Chromosome: chr01 Position: 6606583 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 94.75% | 5.25% |
| All Indica | 720 | 90.97% | 9.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 318 | 96.86% | 3.14% |
| Indica II | 208 | 75.48% | 24.52% |
| Indica Intermediate | 194 | 97.94% | 2.06% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106606583 | T->A | INTERGENIC | None |