Detailed information of SNP:
|
SNP ID:
sf0106607184(Gbrowse)
Chromosome: chr01 Position: 6607184 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.76% | 40.24% |
| All Indica | 799 | 44.56% | 55.44% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 41.33% | 58.67% |
| Indica II | 213 | 59.15% | 40.85% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106607184 | C->T | INTERGENIC | None |