Detailed information of SNP:
|
SNP ID:
sf0106607619(Gbrowse)
Chromosome: chr01 Position: 6607619 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.63% | 40.37% |
| All Indica | 797 | 45.17% | 54.83% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 41.71% | 58.29% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 210 | 36.19% | 63.81% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106607619 | C->T | INTERGENIC | None |