Detailed information of SNP:
|
SNP ID:
sf0106610962(Gbrowse)
Chromosome: chr01 Position: 6610962 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 80.18% | 19.82% |
| All Indica | 793 | 66.20% | 33.80% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 54.57% | 45.43% |
| Indica II | 211 | 74.88% | 25.12% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106610962 | C->T | INTERGENIC | None |