Detailed information of SNP:
|
SNP ID:
sf0106625230(Gbrowse)
Chromosome: chr01 Position: 6625230 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 59.48% | 40.52% |
| All Indica | 798 | 47.37% | 52.63% |
| All Japonica | 494 | 74.09% | 25.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 41.07% | 58.93% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 210 | 36.67% | 63.33% |
| Temperate Japonica | 333 | 81.08% | 18.92% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 67 | 50.75% | 49.25% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106625230 | T->G | LOC_Os01g12160(LOC_Os01g12160.1) | INTRON |