Detailed information of SNP:
|
SNP ID:
sf0106644523(Gbrowse)
Chromosome: chr01 Position: 6644523 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 91.34% | 8.66% |
| All Indica | 797 | 85.82% | 14.18% |
| All Japonica | 488 | 98.36% | 1.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 86.89% | 13.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106644523 | G->A | INTERGENIC | None |