Detailed information of SNP:
|
SNP ID:
sf0106650186(Gbrowse)
Chromosome: chr01 Position: 6650186 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.38% | 7.62% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 40.91% | 59.09% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106650186 | G->A | INTERGENIC | None |