Detailed information of SNP:
|
SNP ID:
sf0106668265(Gbrowse)
Chromosome: chr01 Position: 6668265 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 85.80% | 14.20% |
| All Indica | 796 | 91.46% | 8.54% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106668265 | T->A | LOC_Os01g12230(LOC_Os01g12230.1) | Non-Synonymous SNP |