Detailed information of SNP:
|
SNP ID:
sf0106668651(Gbrowse)
Chromosome: chr01 Position: 6668651 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 90.65% | 9.35% |
| All Indica | 793 | 92.31% | 7.69% |
| All Japonica | 456 | 98.46% | 1.54% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 208 | 73.08% | 26.92% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 69 | 92.75% | 7.25% |
| Japonica Intermediate | 54 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106668651 | A->T | LOC_Os01g12230(LOC_Os01g12230.1) | INTRON |