Detailed information of SNP:
|
SNP ID:
sf0106669061(Gbrowse)
Chromosome: chr01 Position: 6669061 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 55.15% | 44.85% |
| All Indica | 790 | 74.30% | 25.70% |
| All Japonica | 497 | 33.00% | 67.00% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 372 | 88.71% | 11.29% |
| Indica II | 209 | 60.77% | 39.23% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106669061 | A->G | LOC_Os01g12230(LOC_Os01g12230.1) | INTRON |