Detailed information of SNP:
|
SNP ID:
sf0106670423(Gbrowse)
Chromosome: chr01 Position: 6670423 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.36% | 47.64% |
| All Indica | 799 | 34.92% | 65.08% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 11.47% | 88.53% |
| Indica II | 213 | 49.77% | 50.23% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106670423 | C->T | INTERGENIC | None |