Detailed information of SNP:
|
SNP ID:
sf0106674404(Gbrowse)
Chromosome: chr01 Position: 6674404 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 86.16% | 13.84% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 64 | 18.75% | 81.25% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106674404 | T->C | INTERGENIC | None |