Detailed information of SNP:



SNP ID: sf0106674404(Gbrowse)

Chromosome: chr01

Position: 6674404
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1416 86.16% 13.84%
All Indica799 91.86% 8.14%
All Japonica497 85.92% 14.08%
Aus64 18.75% 81.25%
Indica I375 100.00% 0.00%
Indica II213 70.89% 29.11%
Indica Intermediate211 98.58% 1.42%
Temperate Japonica335 98.81% 1.19%
Tropical Japonica94 44.68% 55.32%
Japonica Intermediate68 79.41% 20.59%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0106674404 T->C INTERGENIC None