Detailed information of SNP:
|
SNP ID:
sf0106674625(Gbrowse)
Chromosome: chr01 Position: 6674625 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 85.75% | 14.25% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106674625 | A->G | INTERGENIC | None |