Detailed information of SNP:
|
SNP ID:
sf0106678567(Gbrowse)
Chromosome: chr01 Position: 6678567 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 86.51% | 13.49% |
| All Indica | 793 | 83.35% | 16.65% |
| All Japonica | 472 | 89.62% | 10.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 64.62% | 35.38% |
| Indica Intermediate | 206 | 74.27% | 25.73% |
| Temperate Japonica | 317 | 92.74% | 7.26% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 63 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106678567 | T->C | INTERGENIC | None |