Detailed information of SNP:
|
SNP ID:
sf0106680042(Gbrowse)
Chromosome: chr01 Position: 6680042 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.87% | 40.13% |
| All Indica | 798 | 64.29% | 35.71% |
| All Japonica | 497 | 60.76% | 39.24% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 86.90% | 13.10% |
| Indica II | 213 | 48.83% | 51.17% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 335 | 64.48% | 35.52% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106680042 | A->T | INTERGENIC | None |