Detailed information of SNP:
|
SNP ID:
sf0106683036(Gbrowse)
Chromosome: chr01 Position: 6683036 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 55.80% | 44.20% |
| All Indica | 798 | 66.04% | 33.96% |
| All Japonica | 493 | 46.45% | 53.55% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 48.83% | 51.17% |
| Indica Intermediate | 210 | 46.67% | 53.33% |
| Temperate Japonica | 332 | 48.19% | 51.81% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106683036 | A->G | INTERGENIC | None |