Detailed information of SNP:
|
SNP ID:
sf0106683533(Gbrowse)
Chromosome: chr01 Position: 6683533 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.00% | 42.00% |
| All Indica | 799 | 36.55% | 63.45% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 13.33% | 86.67% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106683533 | G->A | INTERGENIC | None |