Detailed information of SNP:
|
SNP ID:
sf0106684208(Gbrowse)
Chromosome: chr01 Position: 6684208 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.48% | 42.52% |
| All Indica | 798 | 36.22% | 63.78% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 13.37% | 86.63% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106684208 | T->A | INTERGENIC | None |