Detailed information of SNP:
|
SNP ID:
sf0106685529(Gbrowse)
Chromosome: chr01 Position: 6685529 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.79% | 42.21% |
| All Indica | 799 | 36.55% | 63.45% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 13.60% | 86.40% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106685529 | A->G | INTERGENIC | None |