Detailed information of SNP:
|
SNP ID:
sf0106685584(Gbrowse)
Chromosome: chr01 Position: 6685584 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 83.67% | 16.33% |
| All Indica | 782 | 85.17% | 14.83% |
| All Japonica | 485 | 78.76% | 21.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 99.73% | 0.27% |
| Indica II | 208 | 63.94% | 36.06% |
| Indica Intermediate | 208 | 80.77% | 19.23% |
| Temperate Japonica | 328 | 83.54% | 16.46% |
| Tropical Japonica | 92 | 78.26% | 21.74% |
| Japonica Intermediate | 65 | 55.38% | 44.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106685584 | C->T | INTERGENIC | None |