Detailed information of SNP:
|
SNP ID:
sf0106688613(Gbrowse)
Chromosome: chr01 Position: 6688613 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 88.65% | 11.35% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106688613 | T->C | INTERGENIC | None |