Detailed information of SNP:
|
SNP ID:
sf0106714029(Gbrowse)
Chromosome: chr01 Position: 6714029 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 59.12% | 40.88% |
| All Indica | 744 | 36.56% | 63.44% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 15.07% | 84.93% |
| Indica II | 201 | 45.77% | 54.23% |
| Indica Intermediate | 198 | 64.65% | 35.35% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106714029 | G->A | INTERGENIC | None |