Detailed information of SNP:
|
SNP ID:
sf0106724146(Gbrowse)
Chromosome: chr01 Position: 6724146 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 77.64% | 22.36% |
| All Indica | 795 | 85.41% | 14.59% |
| All Japonica | 494 | 76.52% | 23.48% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 209 | 69.38% | 30.62% |
| Temperate Japonica | 334 | 82.04% | 17.96% |
| Tropical Japonica | 92 | 69.57% | 30.43% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106724146 | T->A | LOC_Os01g12320(LOC_Os01g12320.2) | UTR_3_PRIME |
| sf0106724146 | T->A | LOC_Os01g12320(LOC_Os01g12320.1) | UTR_3_PRIME |
| sf0106724146 | T->A | LOC_Os01g12320(LOC_Os01g12320.3) | UTR_3_PRIME |