Detailed information of SNP:
|
SNP ID:
sf0106724386(Gbrowse)
Chromosome: chr01 Position: 6724386 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.20% | 9.80% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106724386 | G->T | LOC_Os01g12320(LOC_Os01g12320.2) | SNPs that introduce stop codons |
| sf0106724386 | G->T | LOC_Os01g12320(LOC_Os01g12320.1) | SNPs that introduce stop codons |
| sf0106724386 | G->T | LOC_Os01g12320(LOC_Os01g12320.3) | SNPs that introduce stop codons |