Detailed information of SNP:
|
SNP ID:
sf0106731078(Gbrowse)
Chromosome: chr01 Position: 6731078 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 51.62% | 48.38% |
| All Indica | 798 | 31.08% | 68.92% |
| All Japonica | 497 | 77.06% | 22.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 12.83% | 87.17% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 85.97% | 14.03% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106731078 | A->G | INTERGENIC | None |