Detailed information of SNP:
|
SNP ID:
sf0106742514(Gbrowse)
Chromosome: chr01 Position: 6742514 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 57.07% | 42.93% |
| All Indica | 789 | 32.70% | 67.30% |
| All Japonica | 476 | 90.55% | 9.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 12.80% | 87.20% |
| Indica II | 204 | 43.14% | 56.86% |
| Indica Intermediate | 210 | 58.10% | 41.90% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 79 | 59.49% | 40.51% |
| Japonica Intermediate | 63 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106742514 | A->G | LOC_Os01g12340(LOC_Os01g12340.1) | Synonymous |