Detailed information of SNP:
|
SNP ID:
sf0106769801(Gbrowse)
Chromosome: chr01 Position: 6769801 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 54.63% | 45.37% |
| All Indica | 796 | 31.03% | 68.97% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 12.87% | 87.13% |
| Indica II | 213 | 42.72% | 57.28% |
| Indica Intermediate | 210 | 51.43% | 48.57% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106769801 | C->A | INTERGENIC | None |