Detailed information of SNP:
|
SNP ID:
sf0106771114(Gbrowse)
Chromosome: chr01 Position: 6771114 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 69.11% | 30.89% |
| All Indica | 798 | 70.55% | 29.45% |
| All Japonica | 446 | 78.03% | 21.97% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 59.15% | 40.85% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 294 | 82.65% | 17.35% |
| Tropical Japonica | 92 | 71.74% | 28.26% |
| Japonica Intermediate | 60 | 65.00% | 35.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106771114 | T->G | INTERGENIC | None |