Detailed information of SNP:
|
SNP ID:
sf0106772680(Gbrowse)
Chromosome: chr01 Position: 6772680 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 71.72% | 28.28% |
| All Indica | 798 | 61.40% | 38.60% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 210 | 44.76% | 55.24% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106772680 | A->G | INTERGENIC | None |