Detailed information of SNP:
|
SNP ID:
sf0106780087(Gbrowse)
Chromosome: chr01 Position: 6780087 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1344 | 60.42% | 39.58% |
| All Indica | 794 | 97.48% | 2.52% |
| All Japonica | 430 | 2.33% | 97.67% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 331 | 0.91% | 99.09% |
| Tropical Japonica | 45 | 13.33% | 86.67% |
| Japonica Intermediate | 54 | 1.85% | 98.15% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106780087 | A->C | INTERGENIC | None |