Detailed information of SNP:
|
SNP ID:
sf0106793361(Gbrowse)
Chromosome: chr01 Position: 6793361 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 79.42% | 20.58% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 487 | 43.12% | 56.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 326 | 35.28% | 64.72% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106793361 | T->C | INTERGENIC | None |