Detailed information of SNP:
SNP ID:
sf0106797403(Gbrowse)
Chromosome: chr01 Position: 6797403 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 69.89% | 30.11% |
All Indica | 799 | 99.37% | 0.63% |
All Japonica | 497 | 17.10% | 82.90% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 97.63% | 2.37% |
Temperate Japonica | 335 | 2.09% | 97.91% |
Tropical Japonica | 94 | 65.96% | 34.04% |
Japonica Intermediate | 68 | 23.53% | 76.47% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0106797403 | T->C | INTERGENIC | None |