Detailed information of SNP:
|
SNP ID:
sf0106801861(Gbrowse)
Chromosome: chr01 Position: 6801861 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 69.92% | 30.08% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 494 | 17.41% | 82.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 66 | 24.24% | 75.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106801861 | A->G | INTERGENIC | None |