Detailed information of SNP:
|
SNP ID:
sf0106802188(Gbrowse)
Chromosome: chr01 Position: 6802188 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 52.09% | 47.91% |
| All Indica | 792 | 69.19% | 30.81% |
| All Japonica | 496 | 16.73% | 83.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 86.56% | 13.44% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 207 | 45.41% | 54.59% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106802188 | T->C | INTERGENIC | None |