Detailed information of SNP:
|
SNP ID:
sf0106806279(Gbrowse)
Chromosome: chr01 Position: 6806279 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 78.69% | 21.31% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 495 | 41.82% | 58.18% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 28.96% | 71.04% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106806279 | G->T | INTERGENIC | None |