Detailed information of SNP:
|
SNP ID:
sf0106807949(Gbrowse)
Chromosome: chr01 Position: 6807949 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 83.17% | 16.83% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 469 | 51.81% | 48.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 319 | 38.24% | 61.76% |
| Tropical Japonica | 90 | 94.44% | 5.56% |
| Japonica Intermediate | 60 | 60.00% | 40.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106807949 | G->A | INTERGENIC | None |