Detailed information of SNP:
|
SNP ID:
sf0106818630(Gbrowse)
Chromosome: chr01 Position: 6818630 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 72.07% | 27.93% |
| All Indica | 774 | 87.98% | 12.02% |
| All Japonica | 496 | 42.14% | 57.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 89.65% | 10.35% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 194 | 72.68% | 27.32% |
| Temperate Japonica | 334 | 29.64% | 70.36% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106818630 | G->A | INTERGENIC | None |